Basic Information
VIS ID
TVIS44025962
Fusion event
HTLV-1-ZNF804B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
88943196/89313882 (Hg38)
End
88943196/89313882 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF804B
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10525/Upstream/13398613; hsa-mir-10399/Downstream/2890133;
Nearest TSS
ENST00000635602/Upstream/95728; ENST00000448260/Downstream/130092;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/553913, chr7-CpG: 98/Downstream/804696
Upstream sequence
AGTGGAGAGGATATGTGAAGACCACCTTCCCTTTCTTTTCCTTGACCTCTGCAACTGTCCTTTATTGCATTGTTTTTGATCTGGGTAGAGGTTATGGAAG
Downstream sequence
GTAACTACTCTCCAGAACTATGAAGCCTATCTGCTTTGTCGTTTCTCTTTAAGTCCCTTTAAAAAAATCTAAAGACATGAATTAGATGCTTGGACATGTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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