Basic Information
VIS ID
TVIS44025975
Fusion event
HTLV-1-SNX31 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
101635397/100623169 (Hg38)
End
101635397/100623169 (Hg38)
Orient
+
Location type
Intronic
Target gene
SNX31
Nearest miRNA
hsa-mir-12123/Upstream/240324; hsa-mir-10400/Downstream/79799;
Nearest TSS
ENST00000518652/Upstream/4587; ENST00000514926/Downstream/26496;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/63293, chr8-CpG: 33/Downstream/26274
Upstream sequence
aaagaggtttaattggctcacagttctgcaagctgtacagaagcatgatgctggcatctactcagcttctgggaaggcctcaggaagcttacagtcatgg
Downstream sequence
tggaatgtgaagggcaagcaggcatgtcttacatggctggagcaggagcaagggtgggtggaggtgccacacacttttaaacaaccagatctcatgagaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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