Basic Information
VIS ID
TVIS44025980
Fusion event
HTLV-1-BAALC-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
104183202/103170974 (Hg38)
End
104183202/103170974 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA8A
Target gene
BAALC-AS1
Nearest miRNA
hsa-mir-12123/Upstream/16285; hsa-mir-10400/Downstream/1313395;
Nearest TSS
ENST00000518652/Upstream/17835; ENST00000517863/Downstream/1053;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/29812, chr8-CpG: 84/Downstream/127607
Upstream sequence
TTTCCCTGAAGCAGCAATTTATTCTCTATATCATTTGTTATCTGGCAGTTTCATTGAGTAAATGTCTTAATTATTCTTCAACACTATAAAATTGTCATGG
Downstream sequence
TACAGAACACATCTGATGTGTCTTCTTATATCTGGCTAACTTTTAAAATGCCAATCTGATTTATTTGGAAAGCTATCAAGCCAAACAGAGCCAGCTGAAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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