Basic Information
VIS ID
TVIS44025982
Fusion event
HTLV-1-LOC105375690 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
104508861/103496633 (Hg38)
End
104508861/103496633 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8A
Target gene
LOC105375690
Nearest miRNA
hsa-mir-12123/Upstream/341944; hsa-mir-10400/Downstream/987736;
Nearest TSS
ENST00000518652/Upstream/15014; ENST00000395361/Downstream/2587;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/81038, chr8-CpG: 243/Downstream/2194
Nearby gene
RIMS2(+4115) ;
Upstream sequence
atcatagctcactgtagccttgaacttctgggctcaagggatcctcttgccttggccttccaaagtactgggattactggtgtaaaccacagtgcctggc
Downstream sequence
CaggacttgcattttgggattagtttatggcctgtcaagaCTTGAAAATTCAGTGATGAAGACAGCTGTTACTTCTAAAGTTAACGAAGAATACTGGTTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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