Basic Information
VIS ID
TVIS44025996
Fusion event
HTLV-1-LOC101927543 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.12
Reference genome
GRCh37/hg19
Start
121775539/120763299 (Hg38)
End
121775539/120763299 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
LOC101927543
Nearest miRNA
hsa-mir-12123/Upstream/1438034; hsa-mir-10400/Downstream/2452489;
Nearest TSS
ENST00000518652/Upstream/2046; ENST00000605955/Downstream/48264;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/317882, chr8-CpG: 121/Downstream/47876
Upstream sequence
TCCAAGAACTGCCTGGTAATGATGCCCATTGTGAAAAGTAAATTTCTTCTTGGAAAGTAGATAGAGGACTGCAGAAATAAGAAATACAGGCTTCCTGGAA
Downstream sequence
TACTCTTAAAAATGGTTAGCTTACCAAACCCTGAAGAAAACTACAAcaaggggttgatttcattgttagactaattgttaaaatgttctttcttccagga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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