Basic Information
VIS ID
TVIS44025997
Fusion event
HTLV-1-FAM66D integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
11989641/12132132 (Hg38)
End
11989641/12132132 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
FAM66D
Nearest miRNA
hsa-mir-124-1/Upstream/1096830; hsa-mir-10400/Downstream/587000;
Nearest TSS
ENST00000518652/Upstream/16350; ENST00000528514/Downstream/2306;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/15962, chr8-CpG: 119/Downstream/61455
Upstream sequence
CCCCAAGAGGAAATAGTAAACCATGTCCCCTGCAATAACCTCACACGCAAACCTACAGGTCAATAGGTCACATTAAGAAATACACACTGAATGTCATCTA
Downstream sequence
CCATGAACACAAACACACAGACAGTCCCTCCAGAGGTTCGGAAGACTCACGAACCCAAAACTTGATGTTTCCCATGTGTGGGCTCATCCTGAGACGCAGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate