Basic Information
VIS ID
TVIS44026005
Fusion event
HTLV-1-LOC105375752 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
128162636/127150391 (Hg38)
End
128162636/127150391 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
LOC105375752
Nearest miRNA
hsa-mir-12123/Upstream/2328333; hsa-mir-10400/Downstream/645571;
Nearest TSS
ENST00000518652/Upstream/70517; ENST00000642795/Downstream/94246;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/591866, chr8-CpG: 29/Downstream/165251
Nearby gene
CASC19(No orient, 37395)
Upstream sequence
ATTTGTCCCAGCCATACTCCCCTGTAATGTACACTTTTCTCAAACATTTTCCAAATTCACTGCTACAATGCTCTGAACCCTATTTTCTGCAGATGCAACT
Downstream sequence
TTAACACTGTATATTCCCGATCTGATATGAAACAAACAACAGCACCACATTTTCCCTGGATATTGTTTTGCCAAGGCTTTGATCGCCACTGCAATGTGCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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