Basic Information
VIS ID
TVIS44026017
Fusion event
HTLV-1-LOC105375765 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37/hg19
Start
133500240/132487993 (Hg38)
End
133500240/132487993 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375765
Nearest miRNA
hsa-mir-1204/Upstream/2479540; hsa-mir-10400/Downstream/558488;
Nearest TSS
ENST00000518652/Upstream/6974; ENST00000522580/Downstream/73486;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/6654, chr8-CpG: 44/Downstream/187334
Nearby gene
KCNQ3(-7236) ;
Upstream sequence
ctgagatcaaggcgcaggtaggattggtttcccctgagtcctctgtccttggcttgcagatggccgacttcatcctgcttcctcacatggtgtttcctct
Downstream sequence
gtgtgcatgccccctggtgtctccttgtgtgtccaaatgtcttcttatgaggacaccagtcagatgggattaattcctgccctaatgacctcattttaac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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