Basic Information
VIS ID
TVIS44026021
Fusion event
HTLV-1-SLA integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37/hg19
Start
134053605/133041360 (Hg38)
End
134053605/133041360 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLA
Nearest miRNA
hsa-mir-1204/Upstream/3032907; hsa-mir-10400/Downstream/5121;
Nearest TSS
ENST00000518652/Upstream/1019; ENST00000522996/Downstream/18928;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/265570, chr8-CpG: 126/Downstream/254963
Upstream sequence
CCCCACTTCCCATCGGGTTTATGGAGTGCTCTCTGGGGCATCCTTGCCAAAGAACAAAAGGAATTTGTAGCAGAAGAAGCACACTCAGTCTGTCACAGGG
Downstream sequence
CGGGCAAGCCAGGAAGACCTCGTTTCATGGTTTTCAGTCCGACTTCAACTGTGAACTCAAATGTCCACCCACACAGGTGCCCTTGGAGAAATGGGAGGTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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