VISDB Viral Integration Site DataBase

VIS ID

TVIS44026022

Fusion event

HTLV-1-NDRG1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.22

Reference genome

Start

End

134251995/133239752 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-34a-5p ; hsa-mir-423-5p ; hsa-mir-505-3p ; hsa-let-7b-5p ; hsa-mir-4259 ; hsa-mir-4715-5p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-548aj-5p ; hsa-mir-182-5p ; hsa-mir-4503 ; hsa-mir-1290 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-6839-5p ; hsa-mir-570-3p ; hsa-mir-378j ; hsa-mir-4705 ; hsa-mir-1243 ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-548aw ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-4764-5p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-7160-5p ; hsa-mir-1468-3p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-512-3p ; hsa-mir-1265 ; hsa-mir-548at-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4743-5p ; hsa-mir-564 ; hsa-mir-342-3p ; hsa-mir-1228-3p ; hsa-mir-1207-5p ; hsa-mir-1237-5p ; hsa-mir-128-1-5p ; hsa-mir-128-2-5p ; hsa-mir-1827 ; hsa-mir-1909-3p ; hsa-mir-1910-3p ; hsa-mir-3150b-3p ; hsa-mir-4488 ; hsa-mir-4514 ; hsa-mir-4692 ; hsa-mir-4697-5p ; hsa-mir-4763-3p ; hsa-mir-4784 ; hsa-mir-6511a-5p ; hsa-mir-6722-3p ; hsa-mir-6781-5p ; hsa-mir-6798-5p ; hsa-mir-6805-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-6894-5p ; hsa-mir-7114-5p ; hsa-mir-7154-3p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-7847-3p ; hsa-mir-940

Nearest miRNA

hsa-mir-1204/Upstream/193171; hsa-mir-10400/Downstream/1560768;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/463962, chr8-CpG: 126/Downstream/56571

Nearest cancer related gene

NDRG1(TSG, No orient, 0)

Upstream sequence

AACAAGGGCGCTGTCTATTCTTTGGGATCTTCTCTGAGACCTCAAATGCTCTTGCACATGGCACGTGCAAGTGGCACATGCTGATGGGGTAGCACGTGCT

Downstream sequence

GATGGGGTGGAATGAGGAGGAACAATCCTGCCCACCTGTACCGGGTGGGACAGTGTCCCGGAAGATTCACACCTACCTGAAacttcagaagggaacctta