Basic Information
VIS ID
TVIS44026023
Fusion event
HTLV-1-LOC105375771 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37/hg19
Start
134387846/133375603 (Hg38)
End
134387846/133375603 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375771
Nearest miRNA
hsa-mir-1204/Upstream/329022; hsa-mir-10400/Downstream/1424917;
Nearest TSS
ENST00000518652/Upstream/73581; ENST00000561761/Downstream/100331;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/77701, chr8-CpG: 249/Downstream/194123
Nearby gene
NDRG1(-78299) ;
Upstream sequence
ATGGGTGCTTGTCACTGCCTGGCACAATCCCAAGGCCACTGTTCCAGGCTGGAGAAGGGGAGGGCAGTGGGAAGGCTGAAGGCAAGGGAGGGCTGAGGCT
Downstream sequence
GGAAGCCACCTCCCATCTTCCTCCCACATGGAGACGTGCAGCACCTCACGCCCCTCCCAGGAATCCCTCAAGGCCCAGAGGTGACTCAGCAACACGTGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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