Basic Information
VIS ID
TVIS44026026
Fusion event
HTLV-1-LINC01591 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37/hg19
Start
136279486/135267243 (Hg38)
End
136279486/135267243 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01591
Nearest miRNA
hsa-mir-1204/Upstream/462298; hsa-mir-10400/Downstream/5465321;
Nearest TSS
ENST00000518652/Upstream/33006; ENST00000519600/Downstream/189709;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/434418, chr8-CpG: 43/Downstream/189453
Upstream sequence
ttacgcacctgtgtcctggctgttggcatgctgggtaggaacatctgtaggaatgaccgtcttctccatttgactgggaactcttcagggaaaacaccaa
Downstream sequence
atatctacttattttggtatctccaTAAGGGTCAGGAAAAAAAAGTAAACATTTCTTAAATAAATTTAAGTAATCATCCAGTCTGTAAACCTCTGTCTGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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