Basic Information
VIS ID
TVIS44026030
Fusion event
HTLV-1-FAM135B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.23
Reference genome
GRCh37/hg19
Start
139313799/138301556 (Hg38)
End
139313799/138301556 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM135B
miRNAs that regulate target gene
hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-615-3p ; hsa-mir-361-3p
Nearest miRNA
hsa-mir-1204/Upstream/3496611; hsa-mir-10400/Downstream/2431008;
Nearest TSS
ENST00000518652/Upstream/149152; ENST00000518354/Downstream/123959;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2843457, chr8-CpG: 119/Downstream/194996
Upstream sequence
CTATTTTGCCTGGCCTTCAAGAGCTCAATTTTCTTTTTTTTCCTAACGGCATGACATTCAGCTTTCCACTTCCTTTTGTTCTTTGCTCCGAGCTCTGTCT
Downstream sequence
TCAGATGTGGCTTTTCatccactcattcaacaaatacacatgagatgcctactctgccccaggccctctgctaggcaccagccagccagcattgaagaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate