Basic Information
VIS ID
TVIS44026031
Fusion event
HTLV-1-COL22A1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.23
Reference genome
GRCh37/hg19
Start
139877695/138865452 (Hg38)
End
139877695/138865452 (Hg38)
Orient
-
Location type
Intronic
Target gene
COL22A1
miRNAs that regulate target gene
hsa-mir-5587-5p ; hsa-mir-432-3p ; hsa-mir-4436b-5p ; hsa-mir-197-3p ; hsa-mir-1193 ; hsa-mir-6500-3p
Nearest miRNA
hsa-mir-1204/Upstream/4060507; hsa-mir-10400/Downstream/1867112;
Nearest TSS
ENST00000518652/Upstream/37347; ENST00000518354/Downstream/17759;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/367921, chr8-CpG: 60/Downstream/12186
Upstream sequence
tctatgtgtgggtatgtttgtatgcctgtgtgtgagtgtatgtgtgtgtcttgtttgtgtatgtttgtaggcacgtgtgtggtgtgtttgtatgcctgtg
Downstream sequence
tgtgagtgtatgtgtgtatcttatgtttgtatgcatgtgtatgtgtgtgtatgtttgtatgcctgtgtgtgagtatacatgtttatgtttgtatgcctgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate