Basic Information
VIS ID
TVIS44026047
Fusion event
HTLV-1-SGCZ integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p22
Reference genome
GRCh37/hg19
Start
14968141/15110632 (Hg38)
End
14968141/15110632 (Hg38)
Orient
+
Location type
Intronic
Target gene
SGCZ
Nearest miRNA
hsa-mir-124-1/Upstream/257122; hsa-mir-10400/Downstream/2570946;
Nearest TSS
ENST00000518652/Upstream/555706; ENST00000509177/Downstream/127707;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1833841, chr8-CpG: 87/Downstream/126096
Upstream sequence
GGGATTAAGTTTCACCAAAGTGAAATCAAAGCAAAGCAGGTGTGCATATCACAATTCACATGATGCTCAAGTTTGCTGCCTCCTTCCTTCCTAGGGCAGA
Downstream sequence
GTGGGCAGAGCAGTATGGCACTAGCCAGCACCTTCATACGAAAGTTTTTAAAGAggccaggcgtggtggctcactcctgtaatcccagcactttgggaag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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