Basic Information
VIS ID
TVIS44026060
Fusion event
HTLV-1-LOC107986931 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
24025275/24167762 (Hg38)
End
24025275/24167762 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986931
Nearest miRNA
hsa-mir-124-1/Upstream/1922725; hsa-mir-10400/Downstream/786034;
Nearest TSS
ENST00000518652/Upstream/312955; ENST00000523440/Downstream/9318;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/440514, chr8-CpG: 165/Downstream/745627
Nearby gene
ADAM28(+126278) ;
Upstream sequence
AGTTCTATGAAATAAGATAGGCACTTCACCAAAGCTGCAGTTGTTTGAGTGTTAAGACCTGCAAGGGGAAGTAGAGTGCCTTCCCTGGGAAGACAAGACC
Downstream sequence
CAGTTTTCTTGGAGACACACAGGCAGCAAGATTAAAGTCTAATCTCTTTTCCATTGGTGTGCACCAATTCAGCTGAGAGTGTGAAAATCTCTATTCCTCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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