Basic Information
VIS ID
TVIS44026071
Fusion event
HTLV-1-LOC105379364 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
33680717/33823199 (Hg38)
End
33680717/33823199 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105379364
Nearest miRNA
hsa-mir-124-1/Upstream/3865851; hsa-mir-10400/Downstream/7447849;
Nearest TSS
ENST00000518652/Upstream/67422; ENST00000521541/Downstream/184657;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/100117, chr8-CpG: 103/Downstream/1411962
Nearby gene
DUSP26(-223093) ;
Upstream sequence
attatatgacaacttgatatatgacagaagctgcattgcagaccacaaggaaatcattattcatacaaacaaaaatgaaattgcatctctacttcaaact
Downstream sequence
atatataatactacattcctattaaggataaatatgaaagttaagaaagtcaaaaccataaacatttcagaagaaaatacaggagaatatctttatgggg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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