Basic Information
VIS ID
TVIS44026083
Fusion event
HTLV-1-ADAM18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
39493795/39636276 (Hg38)
End
39493795/39636276 (Hg38)
Orient
-
Location type
Intronic
Target gene
ADAM18
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-124-1/Upstream/9678928; hsa-mir-10400/Downstream/1634772;
Nearest TSS
ENST00000518652/Upstream/31649; ENST00000524117/Downstream/48854;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/113262, chr8-CpG: 20/Downstream/1261369
Upstream sequence
cctggataatttttttaaaattttttaaagagatgaagtctcaccatgttgtccacgcctcagtctcccaaagtgttggggttataggcgtgagtcactg
Downstream sequence
cacctgtccAACAATTAACCCTTATATTTCTTTATTAACCTGATATTTTAAtgggaaggtttaaaattacagaatccactttaatagttatatgattata
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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