Basic Information
VIS ID
TVIS44026095
Fusion event
HTLV-1-LOC105375821 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
49351794/48439234 (Hg38)
End
49351794/48439234 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375821
Nearest miRNA
hsa-mir-124-1/Upstream/5542959; hsa-mir-10400/Downstream/13275554;
Nearest TSS
ENST00000518652/Upstream/389654; ENST00000430626/Downstream/77855;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/42253, chr8-CpG: 36/Downstream/75280
Nearby gene
LOC101929268(No orient, 112333)
Upstream sequence
TTGCAGCCACCCTGGCCTGAGTTTCCAGGGCTGACCCAGCTGACCACAGGCCTGGTGCTCAATTTCCTGCACTCCCAAACTCGGCTGCATTCCTGGGAGC
Downstream sequence
TGTGCAAGCCCTGGGAATGGTTTCTCCACCTCCTGCCTGCCTTCACCTTCTCCTTCCTGGGCCCAGGTCACCTTTCTCACTGTTTCCCCTGCCCTCGAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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