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VISDB
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TVIS44026101
Basic Information
VIS ID
TVIS44026101
Fusion event
HTLV-1-PXDNL integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
52714309/51801749 (Hg38)
End
52714309/51801749 (Hg38)
Orient
+
Location type
Intronic
Target gene
PXDNL
Nearest miRNA
hsa-mir-124-1/Upstream/8905474; hsa-mir-10400/Downstream/9913039;
Nearest TSS
ENST00000518652/Upstream/392328;
ENST00000521612/Downstream/7696;
Nearest CpG islands
None/Target,
chr8-CpG: 109/Upstream/392088
,
chr8-CpG: 108/Downstream/96861
Upstream sequence
ttgggggctggttcccGATAAAGAACAGTGTGCACAAAGCCCATTTGGGTTCCTGCCTCTCTAGACTTTCTGCTGCACCTTCATAAACACAATCCACTTA
Downstream sequence
TGTTCTAATTGTATTGTGGCTGGACTGGTAGGCACTAATTTAATAAGCTGAGGTCATTCTATTTAGTTAGATAAAATGTCTATCTTTCATTGGGATATTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HTLV-1 carrier#1
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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