Basic Information
VIS ID
TVIS44026104
Fusion event
HTLV-1-ATP6V1H integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
54754241/53841681 (Hg38)
End
54754241/53841681 (Hg38)
Orient
-
Location type
Exonic
Target gene
ATP6V1H
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-124-1/Upstream/10945406; hsa-mir-10400/Downstream/7873107;
Nearest TSS
ENST00000518652/Upstream/1720; ENST00000523064/Downstream/1218;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/184231, chr8-CpG: 59/Downstream/1335
Upstream sequence
GATAGGATTGCCAGTTGACTTTGTTTGCACGAACTTCTGCAGCCTTGGCAGCAATAATATTGGTGGGGACAGCAGCATCCACAGCACCTCGGATATCCAT
Downstream sequence
TTTGGTCATCTAAACTTCGTAATCTTGAATGTCTTTCAACAAATCTTCAATTTTGATGCAAGGTAAAAACAGAATACGAGGTGTTTCTTTTTTTTACAAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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