Basic Information
VIS ID
TVIS44026107
Fusion event
HTLV-1-LINC00968 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
57440090/56527531 (Hg38)
End
57440090/56527531 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC00968
Nearest miRNA
hsa-mir-124-1/Upstream/13631256; hsa-mir-10400/Downstream/5187257;
Nearest TSS
ENST00000518652/Upstream/38433; ENST00000519314/Downstream/12903;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/79275, chr8-CpG: 77/Downstream/465610
Upstream sequence
tttttagtagaaacggtttttcaccatgttggccgggctgatctcaaactcctgacctcgtgatccccccgtctcggcctcccaaagtgctcggattaca
Downstream sequence
ggtgtgagccaccgcacccggccATATTTTCAGATCTTAATGTTGATGCCCCAACAAGATTTTCTACTAGAAAGTGTGATTGCCTATTTGGGTTTTCATC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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