Basic Information
VIS ID
TVIS44026110
Fusion event
HTLV-1-FAM110B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58935304/58022745 (Hg38)
End
58935304/58022745 (Hg38)
Orient
+
Location type
Intronic
Target gene
FAM110B
miRNAs that regulate target gene
hsa-mir-423-5p ; hsa-mir-183-5p ; hsa-mir-7109-3p
Nearest miRNA
hsa-mir-124-1/Upstream/15126470; hsa-mir-10400/Downstream/3692043;
Nearest TSS
ENST00000518652/Upstream/28177; ENST00000518427/Downstream/8871;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/27482, chr8-CpG: 86/Downstream/122863
Upstream sequence
CATTATGCTTAATTTTTGTAGAACAGCAGAAAACATGAGTATTGATATTGGCATTGTTCTACACTTGCTTATTAAGGAGATGAATAGCTTTTCTTAGGGA
Downstream sequence
AGGCCAAAAGTAGAAATTCTTTGGCCTGAAATCATTGCCACCTGCTCTGGAAAGCACTTGAAGAAGGCTCCAATTATACTTCTAGACAAGAAAGCCCAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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