Basic Information
VIS ID
TVIS44026112
Fusion event
HTLV-1-LOC101929628 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62889122/61976563 (Hg38)
End
62889122/61976563 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101929628
Nearest miRNA
hsa-mir-124-1/Upstream/261704; hsa-mir-10400/Downstream/2402586;
Nearest TSS
ENST00000518652/Upstream/86724; ENST00000524201/Downstream/272028;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/261611, chr8-CpG: 37/Downstream/167825
Nearby gene
MIR4470(+261704) ;
Upstream sequence
TGGTTATTTTAGCTAAACTTTCTTCCCCATCTCCAACTAGACTTCAGAATCAGGCTTCATCATTGCAATGTCCTGGGAAAACAAACCATGAGATGACTGT
Downstream sequence
TGGTCATTCACTTCAGTCCATCTCTGGGTTCTTTACATTGTGAAGTACATGATGAATAGAATCATCACTTTCTTTCTTTGTTCAACACACATCTATCACC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate