Basic Information
VIS ID
TVIS44026117
Fusion event
HTLV-1-LOC105375879 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
65714667/64802110 (Hg38)
End
65714667/64802110 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375879
Nearest miRNA
hsa-mir-124-1/Upstream/422853; hsa-mir-10400/Downstream/9746433;
Nearest TSS
ENST00000518652/Upstream/3349; ENST00000523170/Downstream/3590;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2945, chr8-CpG: 32/Downstream/831713
Nearby gene
CYP7B1(-3319) ;
Upstream sequence
ctgctcaccccttcctcctcagtaacagagtcctccatttttaactgaacaaatgccagtccatcataaagactacTTCTAGTTAgctgggtgtggtggt
Downstream sequence
gtacacctgtagtcccagctacttggctaatcaggaggctgaagcaggaggatcactttgagcccaccgaggacttagaggccacagtgagctatcatca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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