Basic Information
VIS ID
TVIS44026120
Fusion event
HTLV-1-ERICH1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
610708/660708 (Hg38)
End
610708/660708 (Hg38)
Orient
+
Location type
Intronic
Target gene
ERICH1
miRNAs that regulate target gene
hsa-mir-92b-3p
Nearest miRNA
hsa-mir-10400/Downstream/1140417;
Nearest TSS
ENST00000518652/Upstream/19501; ENST00000631653/Downstream/8569;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/10070, chr8-CpG: 15/Downstream/4435
Upstream sequence
ttcaagccactatgcctgtggtcatttgttatgcagaagaagaaaattaatTTTTTTTACAATAAAAATTTTGGAATTCAGTTTCCTCCATCCCTGGCCC
Downstream sequence
TGGcccaaactgggagggagcaagagatgaaagaatggctgggacacagcctgcctgggcagcctcaggacagcgctaagatccgcagctttcgagctgc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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