Basic Information
VIS ID
TVIS44026123
Fusion event
HTLV-1-C8orf34 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69322874/68410639 (Hg38)
End
69322874/68410639 (Hg38)
Orient
-
Location type
Intronic
Target gene
C8orf34
Nearest miRNA
hsa-mir-124-1/Upstream/4031382; hsa-mir-10400/Downstream/6137904;
Nearest TSS
ENST00000518652/Upstream/79148; ENST00000518515/Downstream/27274;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/79071, chr8-CpG: 224/Downstream/1421224
Upstream sequence
gggcaggagtgctggaaccaatgctgtgtggatactgggggatagctgTACACAGGTAGAAAGTCTAAGTGCCAAAGTAAGGAAGGCCTTCCTCTGGAGG
Downstream sequence
TAGAGCGCTTTACTATAGTTCAGTCATAGGCACCTGTCCTCATCTTTCAGGAGATGTGGTGTCCAGCATTACAATTTCTGCTTTACTGCTTCTTGGAGTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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