Basic Information
VIS ID
TVIS44026129
Fusion event
HTLV-1-MSC-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
72817617/71905382 (Hg38)
End
72817617/71905382 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MSC-AS1
Nearest miRNA
hsa-mir-124-1/Upstream/7526125; hsa-mir-10400/Downstream/2643161;
Nearest TSS
ENST00000518652/Upstream/60914; ENST00000518700/Downstream/56552;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/60950, chr8-CpG: 29/Downstream/99688
Upstream sequence
AAGTGACACCTGAAATATGGCTAATAGATCAAAGGGAATGGTATTTTAACTTCTATTAAGGAATTTATGTGTGACACTGTATGGATGAGCATTGTGAGTC
Downstream sequence
AAAAAGATGATAAAATTTTAgaaacatatcacaacatagatttttataaaggatgtatatgtacactttagcgaacagtaaaaaagtagccatattcctg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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