Basic Information
VIS ID
TVIS44026133
Fusion event
HTLV-1-CASC9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
76166252/75254017 (Hg38)
End
76166252/75254017 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
CASC9
Nearest miRNA
hsa-mir-124-1/Upstream/548270; hsa-mir-10400/Downstream/1712751;
Nearest TSS
ENST00000518652/Upstream/77361; ENST00000494318/Downstream/24444;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/269136, chr8-CpG: 91/Downstream/153198
Upstream sequence
tgtctcccaggctggagttctgtggcacgatcttggctctctgcaaactctgcctcccaggttcacaccattctcctgcctcagcctcccgagtagctgg
Downstream sequence
gactacaggtgcctgtcaccgcgcctggctaatttttttaatattttttagtagagacagggtttcaccatgttagccaggatggtctcaatctcttgac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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