Basic Information
VIS ID
TVIS44026144
Fusion event
HTLV-1-LRRC69 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
92141787/91129559 (Hg38)
End
92141787/91129559 (Hg38)
Orient
-
Location type
Intronic
Target gene
LRRC69
Nearest miRNA
hsa-mir-12123/Upstream/10888086; hsa-mir-10400/Downstream/75926;
Nearest TSS
ENST00000518652/Upstream/26838; ENST00000518487/Downstream/795;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/58802, chr8-CpG: 151/Downstream/972269
Upstream sequence
TGAACAATAGGATCTGAGCTCATTTTATTGCCTTGAAAGAACAAAAAAGTTAAAACCAACTCCCATGATATAGTAAATCAGAGTAGAATCAataaaaatg
Downstream sequence
ataataaaaatgattataaaaatgattaATGAAGAAAATTCCCCATCCCTTTCCCCACAGGACCTGCTCCACACATTTTTACTCCATTTCAGTGCTGAGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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