Basic Information
VIS ID
TVIS44026152
Fusion event
HTLV-1-CPQ integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
97840588/96828360 (Hg38)
End
97840588/96828360 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8B
Target gene
CPQ
Nearest miRNA
hsa-mir-12123/Upstream/1755364; hsa-mir-10400/Downstream/1565285;
Nearest TSS
ENST00000518652/Upstream/67120; ENST00000532528/Downstream/201109;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/182645, chr8-CpG: 100/Downstream/449016
Upstream sequence
atatttttaaCTGTGAATGTGAATTTGTCTGACTTCCCTATCCTTACCCAAAGTCCTTAATACAAGTCTCCCATGTGATATCACCCTGCAAACGTGGCCA
Downstream sequence
GCCTTCTATCGTCATTCTCTCCCTCAATTTCTGCTTACTTTCTCATCTTAGTCCTCTCTCCTACCCACCCTCCAGCCAGTGTCTCCTAGTCAATTGGCAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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