Basic Information
VIS ID
TVIS44026153
Fusion event
HTLV-1-CPQ integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
97905889/96893661 (Hg38)
End
97905889/96893661 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8B
Target gene
CPQ
Nearest miRNA
hsa-mir-12123/Upstream/1820665; hsa-mir-10400/Downstream/1499984;
Nearest TSS
ENST00000518652/Upstream/132421; ENST00000532528/Downstream/135808;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/247946, chr8-CpG: 100/Downstream/383715
Upstream sequence
aataggactgataataatgattcccactttaaagatgaggaagctgagattcagagggacaaaataattggactaaggtcaggcacacaccaaaataagt
Downstream sequence
ggaaaatacgattcaaaATGTGGTTCTCTATAACTTGCTGTAGTCATTACCTAGAGCCCTGCAATTTTATATagcataaaataaatgctttaaggattac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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