Basic Information
VIS ID
TVIS44026173
Fusion event
HTLV-1-LOC107987116 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
114393165/111630885 (Hg38)
End
114393165/111630885 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9E
Target gene
LOC107987116
Nearest miRNA
hsa-let-7a-1/Upstream/359671; hsa-mir-12126/Downstream/301215;
Nearest TSS
ENST00000422679/Upstream/31030; ENST00000463589/Downstream/467;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/146381, chr9-CpG: 84/Downstream/181
Nearby gene
DNAJC25-GNG10(+467) ;
Upstream sequence
aaggcaaagaattatctggtctaaaatgtcaatagcgtggaggctgagaaaAACTGAACTAGATGGCTATGAACTTTCAGGGTCCCTACCTAGTACACAG
Downstream sequence
GCAGCGCCTAGAATTGCTAAGTTCATCTTCCGTTTGGAAAGGCAGCATGGGGTTAGTGAGAGGAAGGCGCCCGGGGCTGGTGGCTGGCTTTAAAGGCCTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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