Basic Information
VIS ID
TVIS44026174
Fusion event
HTLV-1-MIR3134 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
114831313/112069033 (Hg38)
End
114831313/112069033 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA9E
Target gene
MIR3134
Nearest miRNA
hsa-let-7a-1/Upstream/136864; hsa-mir-12126/Downstream/2140401;
Nearest TSS
ENST00000422679/Upstream/10562; ENST00000480881/Downstream/35925;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/171540, chr9-CpG: 90/Downstream/105841
Upstream sequence
TCATTTACCAAGTCTGGGGGAAGACGAGAAGCAGCTCACTTCTAGGTCTGTTCAGGTTGAAGTGTATAAGGAATCCTCCAGCAGGCAGTTAGAAACATAG
Downstream sequence
GTCTGGAGCCTAGGAGCAAACCCCATGGTGGAGATACAGAGGCAGCTCACAGGGAGGAGTGAACGTGGCCACCAGGGAGCCAGTATCAAAGTATGTGAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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