Basic Information
VIS ID
TVIS44026187
Fusion event
HTLV-1-C5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
123727621/120965343 (Hg38)
End
123727621/120965343 (Hg38)
Orient
-
Location type
Intronic
Target gene
C5
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-10a-5p
Nearest miRNA
hsa-let-7a-1/Upstream/720293; hsa-mir-12126/Downstream/1154739;
Nearest TSS
ENST00000422679/Upstream/2636; ENST00000468952/Downstream/16549;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/35946, chr9-CpG: 89/Downstream/109081
Upstream sequence
ctgggtgcggtggctcacacctgtcatcccagcactttgagaggctgagtcagatcagctgaagccaggagttcgagaccagcctggccaacatggtgaa
Downstream sequence
accacttctctactaaaaatacaaaaattagctggctgtggtagctcacacctgtaatcccagctacttaagaggctgaggcacgagaatggcttgaggc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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