VISDB Viral Integration Site DataBase

VIS ID

TVIS44026192

Fusion event

HTLV-1-OLFML2A integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr9

Cytoband

q33.3

Reference genome

Start

End

127558216/124795937 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-146a-5p ; hsa-mir-6514-3p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-622 ; hsa-mir-4709-5p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-486-3p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6798-5p ; hsa-mir-6805-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-6775-3p ; hsa-mir-1291 ; hsa-mir-146b-3p ; hsa-mir-3918 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-7160-3p ; hsa-mir-4768-3p ; hsa-mir-4695-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-1273c ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-548p ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-193a-5p ; hsa-mir-2355-3p ; hsa-mir-320e ; hsa-mir-3655 ; hsa-mir-3909 ; hsa-mir-4666b ; hsa-mir-676-3p ; hsa-mir-6852-3p

Nearest miRNA

hsa-let-7a-1/Upstream/102139; hsa-mir-12126/Downstream/2894750;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/18135, chr9-CpG: 52/Downstream/13910

Upstream sequence

ACTGGGCTAGTGCCCAGCTGCTGTGGAGGCAGAGGTGCTGCGTGTCCTGCCCTGGTCAGGGTGAATGTGCTATAGGACTGGGCAGGGGACCAGGACTGCC

Downstream sequence

CCTGGGGACAAGGACAGAGTTGGGCGAGCATGGGGGTCCAAGCTGCAGGTTCGAGGTTTGTATCTCTGCTGGCGCAGCCTCACCTCCGCCTGTTTCCTGC