Basic Information
VIS ID
TVIS44026193
Fusion event
HTLV-1-SCAI integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
127709096/124946817 (Hg38)
End
127709096/124946817 (Hg38)
Orient
-
Location type
UTR3
Target gene
SCAI
miRNAs that regulate target gene
hsa-mir-1273e ; hsa-mir-6771-5p ; hsa-mir-873-5p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-302f ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-4758-3p ; hsa-mir-4537 ; hsa-mir-4286 ; hsa-mir-3651 ; hsa-mir-6769a-3p ; hsa-mir-3943 ; hsa-mir-4323 ; hsa-mir-625-5p ; hsa-mir-129-5p ; hsa-mir-3149 ; hsa-mir-411-5p
Nearest miRNA
hsa-let-7a-1/Upstream/253019; hsa-mir-12126/Downstream/2743870;
Nearest TSS
ENST00000422679/Upstream/5718; ENST00000416065/Downstream/1196;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/5282, chr9-CpG: 70/Downstream/196216
Upstream sequence
CCCAGATTTTTATAGCACACCATGCATCTAATATTAAAAACTCTACTTCATGTGCGAATATATCATCAACTTGCAGAACACAAGTGGTCTCATAGAGACA
Downstream sequence
CAGCAATACGAGTGAAGGCATTTTATTCAGTGGAAGCATTTTCTCAGATGAGCCTACTCACCTTTGATATGCAAGTCCAGTAAGAAAAAATCTGTAGCCG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate