Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene127522622126914774127223166127213783127221907127194288127200004127183831127188746127168921127171615127178611127181286127174117127175489127172074127173070127210742127211431127175787127175981127189042127189191127211462127211611127214542127214691127214722127214871127205202127205291127218698
Basic Information
VIS ID
TVIS44026196
Fusion event
HTLV-1-RALGPS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
129980977/127218698 (Hg38)
End
129980977/127218698 (Hg38)
Orient
-
Location type
Intronic
Target gene
RALGPS1
miRNAs that regulate target gene
hsa-mir-377-3p ; hsa-mir-342-3p ; hsa-mir-3120-3p ; hsa-mir-8485
Nearest miRNA
hsa-let-7a-1/Upstream/2524900; hsa-mir-12126/Downstream/471989;
Nearest TSS
ENST00000422679/Upstream/2528; ENST00000487565/Downstream/3209;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/302968, chr9-CpG: 161/Downstream/5587
Upstream sequence
gttATTGCCATACCCTCTCCCTACCCAACCTGCTCATTCCCAGACTCACGGGGAAAGGCCTGTCCCTTCCCCTAGGGACCACCACCCCTTGTCCTTCTCT
Downstream sequence
GAGGTCGGAACTTTAACAAGAGGCTGAGCTTTCTCTTCTAGGTACCTGCAAACCTTATGTCATTTGAGTAAGTCTCTGCAGGACGTGGCATGACTTCAGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate