Basic Information
VIS ID
TVIS44026203
Fusion event
HTLV-1-LOC102723803 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
1309663/1309663 (Hg38)
End
1309663/1309663 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102723803
Nearest miRNA
hsa-mir-1302-9/Upstream/1279382; hsa-let-7a-1/Downstream/3540634;
Nearest TSS
ENST00000422679/Upstream/255039; ENST00000637134/Downstream/670627;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/257423, chr9-CpG: 266/Downstream/705168
Nearby gene
DMRT2(+252109) ;
Upstream sequence
AACACTAAAATTTTGCGTGGCCAAGTACACCAAAAGGAAGCCAGGGAAAGTCTTAACCTTGAGTTTGCTTTCTGTTAAAGGGAGTGTTTTTATGGATTTT
Downstream sequence
ATTAAAGATCATGCTTGTAAAAAGAATTGGGTACATTATTTTGCCAAAAAATAACTTGAAAATTAGTTTTTCCTCTTGCCTTTCCCACTGTATATGAACC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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