Basic Information
VIS ID
TVIS44026212
Fusion event
HTLV-1-LINC01502 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
138469415/135577569 (Hg38)
End
138469415/135577569 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01502
Nearest miRNA
hsa-let-7a-1/Upstream/726762; hsa-mir-126/Downstream/941999;
Nearest TSS
ENST00000422679/Upstream/2618; ENST00000447497/Downstream/6174;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/28356, chr9-CpG: 22/Downstream/121868
Upstream sequence
ATGAATGTAAGGTGAGTGCCTGGTGGGGACACGTGGGGTGAGCGAGGGAGCTTCTCAGGCTCTCGCTGCCATCCAGGCCCTGGGCTGATGGAAAGGAGGT
Downstream sequence
CACTGGCCACTCTTCTTCACCAGGCTGCAGCCACTTTGGAGTCCACCTTTCCGGCTTCTAACAGTTTCAGTCAGCAGGTCCCTTTTTAACTGGATCATGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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