VISDB Viral Integration Site DataBase

VIS ID

TVIS44026217

Fusion event

HTLV-1-TOR4A integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.3

Reference genome

Start

End

140174360/137279908 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-26b-5p ; hsa-mir-125a-5p ; hsa-let-7b-5p ; hsa-mir-6727-5p ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-6781-5p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-4467 ; hsa-mir-744-5p ; hsa-mir-4706 ; hsa-mir-4749-5p ; hsa-mir-8072 ; hsa-mir-3960 ; hsa-mir-4508 ; hsa-mir-6775-5p ; hsa-mir-5090 ; hsa-mir-6847-5p ; hsa-mir-4781-5p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-616-3p ; hsa-mir-187-3p ; hsa-mir-4317 ; hsa-mir-6774-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-4523 ; hsa-mir-1253 ; hsa-mir-1343-5p ; hsa-mir-3135a ; hsa-mir-3150a-3p ; hsa-mir-3175 ; hsa-mir-3622a-5p ; hsa-mir-4423-3p ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-4525 ; hsa-mir-4716-3p ; hsa-mir-5010-5p ; hsa-mir-5197-3p ; hsa-mir-5582-5p ; hsa-mir-5703 ; hsa-mir-658 ; hsa-mir-6731-5p ; hsa-mir-6763-5p ; hsa-mir-6767-3p ; hsa-mir-6794-5p ; hsa-mir-6825-5p ; hsa-mir-8085 ; hsa-mir-939-5p ; hsa-mir-1184 ; hsa-mir-1234-3p ; hsa-mir-1288-3p ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3196 ; hsa-mir-3199 ; hsa-mir-4418 ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-661 ; hsa-mir-6816-5p ; hsa-mir-7107-5p ; hsa-mir-8052

Nearest miRNA

hsa-let-7a-1/Upstream/110638; hsa-mir-602/Downstream/170118;

Nearest TSS

Nearest CpG islands

chr9-CpG: 341/Target, None/Upstream, None/Downstream

Upstream sequence

TGCTTCCGGGACGAGATGGCGGGTGAGGGCTTCTTTCCTGACCAGGCCCGCGCGGAGAACCTGGCCGCGCAGCTCAGCTTCTACCGCGTGGCTGGCCGCG

Downstream sequence

AGTTTGCCGTCACCGGCTGCAAGCAGGTGGTGGCCACGGTGAACCTCCTGTAGTGGAGGCGCAGGACGGGACGTTTGGGTTGATGGCGGCAGTAGGAGGG