VISDB Viral Integration Site DataBase

VIS ID

TVIS44026229

Fusion event

HTLV-1-ELAVL2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr9

Cytoband

p21.3

Reference genome

Start

End

23701183/23701185 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-221-3p ; hsa-mir-101-3p ; hsa-mir-26b-5p ; hsa-mir-200c-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-4477a ; hsa-mir-3194-3p ; hsa-mir-3607-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-4639-5p ; hsa-mir-500a-3p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-6804-3p ; hsa-mir-539-5p ; hsa-mir-4521 ; hsa-mir-4712-3p ; hsa-mir-541-5p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-6739-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-665 ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-4272 ; hsa-mir-548l ; hsa-mir-375 ; hsa-mir-26a-5p

Nearest miRNA

hsa-mir-101-2/Upstream/2189000; hsa-let-7a-1/Downstream/5162441;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/1253489, chr9-CpG: 156/Downstream/119508

Upstream sequence

aacatgaatacctctagacattgccaaatgttccctgggaggcaaaaatcacccttggttaagaatcactgCTGTAGGTTACTGTCCTTTGGTCCCCACC

Downstream sequence

TTCAATATTAGCAAAAGACACTATTCCTCAAGTAGATTCTCTCTGTGCCCATGGAGATGAAAAATTAATAGTAATAAAACCAACAACACTGACAAAAGCA