Basic Information
VIS ID
TVIS44026242
Fusion event
HTLV-1-IL11RA integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
34653223/34653226 (Hg38)
End
34653223/34653226 (Hg38)
Orient
+
Location type
Intronic
Target gene
IL11RA
miRNAs that regulate target gene
hsa-mir-346
Nearest miRNA
hsa-mir-101-2/Upstream/1185291; hsa-let-7a-1/Downstream/954868;
Nearest TSS
ENST00000422679/Upstream/1026; ENST00000555579/Downstream/638;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/6220, chr9-CpG: 64/Downstream/11707
Upstream sequence
TAAGAGCTCCCTGAGAGAGGGGGCTTAGACCATGATGAAGAGTTGCTTTTAGGCGGTGCTGTGAGCCCTGGTAGGGGCtgtgtgcgtgtgtgactgcgtg
Downstream sequence
agtgtatgaatatgtgtaagtgtgtctgagtctgaggcggtgtggctgtgcccgtgtgactgtgagtgaccgcatgtgagagtgtatgagtctgagggta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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