Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene351556603505606435073249351041123511634135088688350966013507383535080016350698473507394235099776351031953510166535104758350780443508086235095069350972133509637835098141350673043506745335105862
Basic Information
VIS ID
TVIS44026244
Fusion event
HTLV-1-FAM214B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
35105859/35105862 (Hg38)
End
35105859/35105862 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM214B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-6818-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-6876-3p ; hsa-mir-626 ; hsa-mir-6845-3p ; hsa-mir-136-5p ; hsa-mir-1182
Nearest miRNA
hsa-mir-101-2/Upstream/1637927; hsa-let-7a-1/Downstream/502232;
Nearest TSS
ENST00000422679/Upstream/2667; ENST00000485086/Downstream/5561;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/2396, chr9-CpG: 34/Downstream/5564
Upstream sequence
TGGCGCAGGAAGGTCATGTGGGCAGCAGGCATGTCCGAGAAGTCAAAGGTCACAAGGAACATCTTTACCACAGTCTGGTTGGGGTTAAATAAGGTCTAGG
Downstream sequence
GACAGGACAGTCAAGGTTGGTAGGGCCTGAGGGCTGCTTTCCTCTCTCCCCACTCCCACTCCCTCAGGGCAAACTCACCACTTGGACGGTGCCCACCTTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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