Basic Information
VIS ID
TVIS44026246
Fusion event
HTLV-1-GLIPR2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
36140972/36140975 (Hg38)
End
36140972/36140975 (Hg38)
Orient
+
Location type
Intronic
Target gene
GLIPR2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-124-3p
Nearest miRNA
hsa-mir-101-2/Upstream/407980; hsa-let-7a-1/Downstream/682564;
Nearest TSS
ENST00000422679/Upstream/4190; ENST00000474050/Downstream/3301;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/3743, chr9-CpG: 56/Downstream/25226
Upstream sequence
ccttcgctgtgctggagtgagaaccTCATTCATTTGTTCACTCACTCATTCACTTAGCAAATATCCAAGCTCAGAGGGACTGAAAAAGGCCATCAAACGT
Downstream sequence
CAATGTAAAGGCAGGGCAGGAGGGGACCTGACCCGGAAGGAGCAGGAACAGGTTCTTCTAAAGCCAAAGCCCAAAAGGTTTCTGTCCCTGTCCGATGGTa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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