Basic Information
VIS ID
TVIS44026250
Fusion event
HTLV-1-FRG1HP integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
69080887/41007658 (Hg38)
End
69080887/41007658 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
FRG1HP
Nearest miRNA
hsa-mir-101-2/Upstream/78566; hsa-let-7a-1/Downstream/226097;
Nearest TSS
ENST00000422679/Upstream/218382; ENST00000613309/Downstream/66052;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/14923, chr9-CpG: 83/Downstream/66229
Upstream sequence
ggcaaagaagttgaaaactttgaaaaaaatAAATGTACATTAATTAACGTGGTATGTCTTTCTCTCATCACCTGTTTTGTTCTTTACTTTTATATTATAC
Downstream sequence
TatgtcattatcagaccttgtaaaattaacaagaattccttaatatgtcatatccagttaatgATTGACTCATTTCTACTCTAGTTAAGGTACAAATTAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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