Basic Information
VIS ID
TVIS44026252
Fusion event
HTLV-1-CNTNAP3B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
65597280/41958665 (Hg38)
End
65597280/41958665 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNTNAP3B
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-101-2/Upstream/724830; hsa-let-7a-1/Downstream/28851310;
Nearest TSS
ENST00000422679/Upstream/5458; ENST00000496386/Downstream/2227;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/5234, chr9-CpG: 68/Downstream/170445
Nearby gene
SPATA31A5(No orient, 87670)
Upstream sequence
ttcctcaagggcaaatatttcacctaagctactggtgttttgttttgttttgttttgttttttgttttcagagcctaacctgcctggaggaaggaaatta
Downstream sequence
cccacctctggccatcctgtcccatgtaagggtggtgatgggagggagggctgagaagctcttgtgaaggtcacagcccagaggcacaggctccctaaag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate