Basic Information
VIS ID
TVIS44026254
Fusion event
HTLV-1-AQP7P3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
42863103/64633825 (Hg38)
End
42863103/64633825 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA9F
Target gene
AQP7P3
Nearest miRNA
hsa-mir-101-2/Upstream/23399990; hsa-let-7a-1/Downstream/6176150;
Nearest TSS
ENST00000422679/Upstream/264230; ENST00000464913/Downstream/131710;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/145018, chr9-CpG: 309/Downstream/139031
Upstream sequence
CATGGGAGGTGGGGTTGGATGGGAGCCAGTGGAGGGTCACCTCGCCCTGCTAGGGAGAGCAGCAGCATTCCTCAGGGCTCCTAAATTCCCCTGACCTCAC
Downstream sequence
AGCAGCAAAAAGTAAGCAGAGGGAATGAGAGACGTCCAGGCATGGAATAAAACATCTTCCACTTTTCAGCTGAGACCCTCTGTTCATGGCTCACCCATCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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