Basic Information
VIS ID
TVIS44026255
Fusion event
HTLV-1-SPATA6L integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
4605087/4605087 (Hg38)
End
4605087/4605087 (Hg38)
Orient
+
Location type
Intronic
Target gene
SPATA6L
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1302-9/Upstream/4574806; hsa-let-7a-1/Downstream/245210;
Nearest TSS
ENST00000422679/Upstream/32752; ENST00000381883/Downstream/57228;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/113669, chr9-CpG: 66/Downstream/57165
Upstream sequence
GGACTGGGATTCATGTGTGCAGGGGAAAGGAATGCTCTGTGGGCCACTTAGCCTGTCTTCTCTCAGTCCTTTGAAAGGACCTCTGCTTGATGAGTGCTGT
Downstream sequence
Gcaccaaattagctgctactcctccgttggatccaagccccactgtctcatcctcaggaagccagccctgactcccagccatgtcaaatacccgctacca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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