Basic Information
VIS ID
TVIS44026299
Fusion event
HTLV-1-LOC100129316 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
93829515/91067233 (Hg38)
End
93829515/91067233 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA9D
Target gene
LOC100129316
Nearest miRNA
hsa-mir-101-2/Upstream/1043698; hsa-let-7a-1/Downstream/569018;
Nearest TSS
ENST00000422679/Upstream/70179; ENST00000608240/Downstream/40071;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/264969, chr9-CpG: 61/Downstream/50210
Upstream sequence
ACTCGGGGATCACCAGTGGTACCTTAAATAATTGGCTGCtctgttaaatggaacctctcgcacctgccttgctgagctgcggtgaggattagagaccacg
Downstream sequence
taagtgaagcacccagtgcctagcaggcctacagtaGCAGCTGCCCGCAGGAGTAGCGGCAAAAGCAGTGGTAGAAGATGGAGTCTACAAATCTCTGCAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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